Index

C

calc_ftest() (in module mgcpy.independence_tests.utils.mdmr_functions) center_distance_matrix() (in module mgcpy.independence_tests.utils.distance_transform) check_rank() (in module mgcpy.independence_tests.utils.mdmr_functions)

circle_sim() (in module mgcpy.benchmarks.simulations) compute_distance() (in module mgcpy.independence_tests.utils.compute_distance_matrix) compute_global_covariance() (mgcpy.independence_tests.dcorr.DCorr method) cub_sim() (in module mgcpy.benchmarks.simulations)

D

DCorr (class in mgcpy.independence_tests.dcorr)

dense_rank_data() (in module mgcpy.independence_tests.utils.distance_transform)

E

EUCLIDEAN_DISTANCE() (in module mgcpy.independence_tests.abstract_class)

exp_sim() (in module mgcpy.benchmarks.simulations)

F

fperms_to_pvals() (in module mgcpy.independence_tests.utils.mdmr_functions)

G

gen_coeffs() (in module mgcpy.benchmarks.simulations) gen_H2_perms() (in module mgcpy.independence_tests.utils.mdmr_functions) gen_IH_perms() (in module mgcpy.independence_tests.utils.mdmr_functions) gen_x_unif() (in module mgcpy.benchmarks.simulations) generate_three_two_d_gaussians() (in module mgcpy.benchmarks.hypothesis_tests.three_sample_test.power) get_name() (mgcpy.independence_tests.abstract_class.IndependenceTest method) (mgcpy.independence_tests.dcorr.DCorr method) (mgcpy.independence_tests.hhg.HHG method) (mgcpy.independence_tests.kendall_spearman.KendallSpearman method) (mgcpy.independence_tests.mdmr.MDMR method) (mgcpy.independence_tests.mgc.MGC method) (mgcpy.independence_tests.rv_corr.RVCorr method)

gower_center() (in module mgcpy.independence_tests.utils.mdmr_functions) gower_center_many() (in module mgcpy.independence_tests.utils.mdmr_functions)

H

hatify() (in module mgcpy.independence_tests.utils.mdmr_functions)

HHG (class in mgcpy.independence_tests.hhg)

I

ind_p_value() (mgcpy.independence_tests.mdmr.MDMR method)

IndependenceTest (class in mgcpy.independence_tests.abstract_class)

J

joint_sim() (in module mgcpy.benchmarks.simulations)

K

k_sample_transform() (in module mgcpy.hypothesis_tests.transforms)

KendallSpearman (class in mgcpy.independence_tests.kendall_spearman)

L

linear_sim() (in module mgcpy.benchmarks.simulations) local_correlations() (in module mgcpy.independence_tests.mgc_utils.local_correlation)

local_covariance() (in module mgcpy.independence_tests.mgc_utils.local_correlation) log_sim() (in module mgcpy.benchmarks.simulations)

M

MDMR (class in mgcpy.independence_tests.mdmr) MGC (class in mgcpy.independence_tests.mgc) mgcpy (module) mgcpy.benchmarks (module) mgcpy.benchmarks.hypothesis_tests (module) mgcpy.benchmarks.hypothesis_tests.three_sample_test (module) mgcpy.benchmarks.hypothesis_tests.three_sample_test.power (module) mgcpy.benchmarks.hypothesis_tests.two_sample_test (module) mgcpy.benchmarks.hypothesis_tests.two_sample_test.power (module) mgcpy.benchmarks.power (module) mgcpy.benchmarks.simulations (module) mgcpy.hypothesis_tests (module) mgcpy.hypothesis_tests.transforms (module) mgcpy.independence_tests (module) mgcpy.independence_tests.abstract_class (module)

mgcpy.independence_tests.dcorr (module) mgcpy.independence_tests.hhg (module) mgcpy.independence_tests.kendall_spearman (module) mgcpy.independence_tests.mdmr (module) mgcpy.independence_tests.mgc (module) mgcpy.independence_tests.mgc_utils (module) mgcpy.independence_tests.mgc_utils.local_correlation (module) mgcpy.independence_tests.mgc_utils.threshold_smooth (module) mgcpy.independence_tests.rv_corr (module) mgcpy.independence_tests.utils (module) mgcpy.independence_tests.utils.compute_distance_matrix (module) mgcpy.independence_tests.utils.distance_transform (module) mgcpy.independence_tests.utils.fast_functions (module) mgcpy.independence_tests.utils.mdmr_functions (module) multi_indep_sim() (in module mgcpy.benchmarks.simulations) multi_noise_sim() (in module mgcpy.benchmarks.simulations)

P

p_value() (mgcpy.independence_tests.abstract_class.IndependenceTest method) (mgcpy.independence_tests.dcorr.DCorr method) (mgcpy.independence_tests.hhg.HHG method) (mgcpy.independence_tests.kendall_spearman.KendallSpearman method) (mgcpy.independence_tests.mdmr.MDMR method) (mgcpy.independence_tests.mgc.MGC method) (mgcpy.independence_tests.rv_corr.RVCorr method)

paired_two_sample_test_dcorr() (in module mgcpy.hypothesis_tests.transforms) paired_two_sample_transform() (in module mgcpy.hypothesis_tests.transforms) power() (in module mgcpy.benchmarks.power) power_given_data() (in module mgcpy.benchmarks.hypothesis_tests.two_sample_test.power) (in module mgcpy.benchmarks.power) power_given_epsilon() (in module mgcpy.benchmarks.hypothesis_tests.three_sample_test.power)

Q

quad_sim() (in module mgcpy.benchmarks.simulations)

R

rank_distance_matrix() (in module mgcpy.independence_tests.utils.distance_transform)

root_sim() (in module mgcpy.benchmarks.simulations) RVCorr (class in mgcpy.independence_tests.rv_corr)

S

sin_sim() (in module mgcpy.benchmarks.simulations) smooth_significant_local_correlations() (in module mgcpy.independence_tests.mgc_utils.threshold_smooth)

spiral_sim() (in module mgcpy.benchmarks.simulations) square_sim() (in module mgcpy.benchmarks.simulations) step_sim() (in module mgcpy.benchmarks.simulations)

T

test_statistic() (mgcpy.independence_tests.abstract_class.IndependenceTest method) (mgcpy.independence_tests.dcorr.DCorr method) (mgcpy.independence_tests.hhg.HHG method) (mgcpy.independence_tests.kendall_spearman.KendallSpearman method) (mgcpy.independence_tests.mdmr.MDMR method) (mgcpy.independence_tests.mgc.MGC method) (mgcpy.independence_tests.rv_corr.RVCorr method)

threshold_local_correlations() (in module mgcpy.independence_tests.mgc_utils.threshold_smooth) transform_distance_matrix() (in module mgcpy.independence_tests.utils.distance_transform) two_parab_sim() (in module mgcpy.benchmarks.simulations)

U

ubern_sim() (in module mgcpy.benchmarks.simulations)

unbiased_T() (mgcpy.independence_tests.dcorr.DCorr method)

W

w_sim() (in module mgcpy.benchmarks.simulations)